Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR3733922/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  119,721,308
 Normal Paired: 117,656,807 (98.28%)
 Chimeric Paired: 4,637 (0.00%)
 Chimeric Ambiguous: 2,281 (0.00%)
 Unmapped: 2,057,583 (1.72%)
 Ligation Motif Present: 27,370 (0.02%)
Alignable (Normal+Chimeric Paired): 117,661,444 (98.28%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-29T08:53:14,798]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 47,716,505 (39.86%)
PCR Duplicates: 69,944,939 (58.42%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 53,730,939
Intra-fragment Reads: 23,350,394 (19.50% / 48.94%)
Below MAPQ Threshold: 5,913,490 (4.94% / 12.39%)
Hi-C Contacts: 18,452,621 (15.41% / 38.67%)
 Ligation Motif Present: 9,656  (0.01% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 26%
Inter-chromosomal: 3,605,666  (3.01% / 7.56%)
Intra-chromosomal: 14,846,955  (12.40% / 31.11%)
Short Range (<20Kb): 9,034,908  (7.55% / 18.93%)
Long Range (>20Kb): 5,811,976  (4.85% / 12.18%)